DNA and RNA Sequence and Structural Homology Analyses

Index of Resources

DNA Sequence Homology Analysis and Searching
DNA/RNA Structure & Function Analyses
Multifunction Search & Data Retrieval Searchers
Nucleotide Sequence Alignment Servers
Sequence Manipulation Tools
Miscellaneous Analyses


DNA Sequence Homology Analysis & Searching

DNA Sequence Homology Analysis & Searching

Protein Search Using A Nucleotide Sequence

Gene Search Using A Protein Sequence


DNA/RNA Structure & Function Analyses

Multi-Function Structure Analyses

Poly-A Site Prediction

  • HCpolyA - Poly-A Site Prediction (Hamming Clustering Method) - WebGene Server (Italy)
  • POLYA - Recognition of 3'-end Cleavage & Poly-A Signals - BCM (US)
Exon (ORF) Prediction

Splice Site Prediction

TATA Signaling, Promoter & Trans-Factor Bind Site Prediction

Repetitive DNA & CpG Isles Analyses

tRNA Gene Prediction

  • Pol3Scan - Analysis of tRNA Genes & Related Elements - ISB (Italy)
  • tRNAscan - Genomic tRNA Gene Identification - WUSTL (US)

Multi-Function Search & Data Retrieval Servers


Nucleotide Sequence Alignment Servers


Sequence Manipulation Tools

Sequence Assembly Tools

  • CAP - Contig Assembly Program for Sequence Fragment Alignment and Assembly - TIGEM (Italy)
Sequence Orientation Conversion Utilities

Restriction Enzyme Mapping Analysis

Translate a DNA Sequence into a Protein

Sequence Presentation/Publication Tools

  • BOXSHADE - Printing and Shading of Multiple Sequence Alignments - ISREC (Switzerland)
Gene Mapping


Miscellaneous Analyses



Last modified 28 February 2001 by Christopher M. Smith at CMSMBR - SDSC
Copyright © 1996-2001 Christopher M. Smith & The Regents of the University of California